VAPr
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Contents:
Introduction
Downstream Analysis
VAPr core
Tutorial
API Reference
VAPr
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Welcome to VAPr’s documentation!
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Welcome to VAPr’s documentation!
¶
Contents:
Introduction
Installation
Ancillary Libraries
MongoDB
BCFtools
Tabix
ANNOVAR
VAPr
Annotation Quickstart using ANNOVAR
Downloading the ANNOVAR databases
Downstream Analysis
Filtering Variants
1. Rare Deleterious Variants
2. Known Disease Variants
3. Deleterious Compound Heterozygous Variants
4. De novo Variants
Create your own filter
Output Files
Unfiltered Variants CSV
Filtered Variants CSV
Unfiltered Variants VCF
Filtered Variants VCF
VAPr core
Tutorial
API Reference
Submodules
VAPr.annovar_output_parsing module
VAPr.annovar_running module
VAPr.chunk_processing module
VAPr.filtering module
VAPr.validation module
VAPr.vapr_core module
VAPr.vcf_genotype_fields_parsing module
VAPr.vcf_merging module
Module contents
Indices and tables
¶
Index
Module Index
Search Page
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